Protein Information

Protein ZmOrphan49
ZmOrphan49 is a protein in the Orphans family.
Information
Orphans Name:	ZmOrphan49
Species:	Maize
Orphans Family:	Orphans
Gene Name(Synonym):
Uniprot ID:	A0A1D6PDQ1
Subgenome:	1

Overview of domains present in v5 transcripts
	PF00612	PF13178
Zm00001eb017140_T001

Gene ID	Type	Sequence	FIMO	Position
Zm00001d029197	DAPseq	sequence	fimo	position
Zm00001d029197	DAPseq	sequence	fimo	position
Zm00001d029197	ChIPseq	sequence	fimo	position
Zm00001d029197	PChIPseq	sequence	fimo	position

Zm00001eb017140_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MDKEKRRRSWIERIRRLFTTSSSDPKPAPKPAPDKKAKSKRWLPGKLRAQQSFALPAPAPAATEPDQIRRAEDEQSKHAV
AVALATAAAAEAAVAAAHAAAHVVRLTGQAPVVPPLPRQVRGQEKEREQAAVAIQSAYRGYLARRALRALKGLVRLQALI
RGQAVRRQTAATLRGLESLMRIQARHRSRAGGVDHHQQQAADDDDALLLRRGRELFAAAAAVHEQQQASNKRWDSSIFSK
EEMSAMTRSKEEAALKRVRALQYASLHNEKLGLRRPPSPSMSRDDEADALNNQRWSWLEEWVGSQPFDKDVPVAHQSPYT
RSASRGEHDDVVDRLGCSARRSFARPTRTPPRGDCYGDAAQFPGYMASTASAKAKFRSMSTPKERSAAGYDAYSEHCFPF
ADRLLSPIPSMSPIPSVASDMGFARPPVAQRSPRVPAKSPMTPARARTRRSHGGHHSFGSEAALHQLQMEHYTPVR

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF13178
PF13178
PF00612
PF00612
PF13178
Hover here to show all domains

Nucleotide Sequence
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CTCGTATTGTTTCCCCATACGGCGG...

CTCGTATTGTTTCCCCATACGGCGGGGGGCCCACCCACTGATCAAGCGGGAGCAGCAGCAGACAAGGCGGGAGTTGAGCCGGGCGCGTCTCGCGAGTCTTGCCTCGTCTCTCTGCAAATGGGTGCCGTCCATATATAAACTGGACGCGGCAGTGGTCCTCAGTCTTCACACTCCCCACTCCTCTCTCTCTTTCTCCCTCCCTCGTCGTCCCATCGGAACTCGGATGGGGAGCGGGAGCGAGGCGCATCTGCCGCGGAGCCGTTCGGTCTCCGCGCAGCCTTGAGCGCCGCACCGTGTCTTCGGGCTGTCCAGCTTGCGTCGCGAGGGGCGAGACGCTACGCGAGAGCGCGACAGGGCTCTTGGATCCCCCCAGAGGGCCACAGAGCCCACACAACAGCAGATACCCGCCGCGCAGTGGAGCCTAGATAGAGAGAGAGAGAGAGAGTAGTGCAGCCGCTACCGCTCTCGCTCGCTCGGCCGTCGGCGACATGGACAAGGAGAAGAGGAGGAGGAGCTGGATCGAGCGCATCAGGCGGCTCTTCACCACCTCGTCGTCCGACCCCAAGCCCGCGCCCAAACCAGCACCAGACAAGAAGGCCAAGAGCAAGCGGTGGCTGCCGGGGAAGCTGCGCGCGCAGCAGTCGTTCGCGCTCCCGGCGCCCGCGCCCGCGGCCACGGAACCGGACCAGATCAGGCGGGCGGAGGACGAGCAGAGCAAGCACGCCGTGGCCGTCGCCCTCGCCACCGCGGCCGCCGCCGAGGCCGCTGTCGCCGCCGCGCACGCCGCCGCCCACGTGGTCCGCCTCACCGGCCAGGCGCCGGTGGTGCCGCCCTTGCCCCGGCAGGTGCGGGGGCAGGAGAAGGAGCGGGAGCAGGCCGCCGTCGCCATCCAGTCGGCTTACCGCGGATACCTGGCTCGGCGGGCGCTGCGCGCGCTCAAGGGCCTGGTGCGGCTGCAGGCGCTGATCCGGGGGCAGGCGGTGCGGCGGCAGACGGCGGCCACGCTGCGCGGCCTCGAATCCCTCATGCGGATCCAGGCCCGCCACCGGTCCAGGGCCGGCGGCGTCGACCACCACCAGCAGCAGGCGGCGGACGACGACGACGCCCTGCTGCTGCGGCGCGGCAGGGAGCTCTTTGCCGCTGCCGCCGCCGTCCACGAGCAGCAGCAGGCGAGCAACAAGCGGTGGGACAGCAGCATCTTCTCCAAGGAAGAGATGAGCGCCATGACGAGGAGCAAGGAGGAGGCGGCCCTCAAGCGCGTGCGCGCGCTGCAGTACGCCTCCCTGCACAACGAGAAGCTGGGCCTCCGGCGGCCGCCCTCCCCCTCCATGTCCAGGGACGACGAGGCGGACGCGCTGAACAACCAGCGCTGGAGCTGGCTGGAGGAGTGGGTCGGCTCGCAGCCCTTCGACAAGGACGTCCCCGTGGCGCACCAGTCCCCGTACACCCGCAGCGCCAGCAGGGGTGAGCACGACGACGTCGTCGACCGGCTCGGCTGCTCGGCCCGCCGCTCCTTCGCCCGGCCGACGCGCACGCCGCCGAGGGGGGACTGCTACGGCGACGCGGCGCAGTTCCCGGGGTACATGGCCTCCACCGCGTCCGCCAAGGCCAAGTTCAGGTCCATGAGCACGCCCAAGGAGCGCTCCGCCGCCGGCTACGACGCCTACTCGGAGCACTGCTTCCCGTTCGCCGACCGCCTGCTCTCGCCGATCCCGTCCATGTCGCCCATCCCCTCCGTCGCCAGCGACATGGGCTTCGCCAGGCCGCCCGTCGCGCAGCGGTCGCCGCGGGTGCCGGCCAAGAGCCCCATGACGCCCGCGAGGGCGCGCACGCGGAGGTCGCACGGCGGCCACCACAGCTTCGGCTCCGAGGCTGCGCTGCACCAGCTGCAGATGGAGCACTACACCCCAGTCCGCTGAACGTTTGCTCTTTTTCTGATGATGCGATGCAACGAGCAACGATGCCGTCCGTCGGTCCTTTGTGAAGATACAATTCTTTTGTTTGTTCGACTTCCTTACCATAAATTGGTGGGTTCAAATGTTGGATGCAAGACGATGGAACTTTCAATCGCACTGTAGGTGACAATGCACCGTGGATCCATGATGTAAGAGCGCAAACTATATGAATTGTGATCTGGGCCTAGTCAGTCCTGAACAGAGGCACGGTCCCCTTTCCCACTGTCTAGGGAATAAGAGTCGCCAACAGGAGTATGTAAACTCCTTGATTGCACGCTTCCTGAGTCGCCAACAGGGAATAAGCACAATAATTATCTTC

GRMZM2G102497_T01 from maize genome v3

Related TFome: pUT6832

Amino Acid Sequence
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MDKEKRRRSWIERIRRLFTTSSSDPKPAPKPAPDKKAKSKRWLPGKLRAQQSFALPAPAPAATEPDQIRRAEDEQSKHAV
AVALATAAAAEAAVAAAHAAAHVVRLTGQAPVVPPLPRQVRGQEKEREQAAVAIQSAYRGYLARRALRALKGLVRLQALI
RGQAVRRQTAATLRGLESLMRIQARHRSRAGGVDHHQQQAADDDDALLLRRGRELFAAAAAVHEQQQASNKRWDSSIFSK
EEMSAMTRSKEEAALKRVRALQYASLHNEKLGLRRPPSPSMSRDDEADALNNQRWSWLEEWVGSQPFDKDVPVAHQSPYT
RSASRGEHDDVVDRLGCSARRSFARPTRTPPRGDCYGDAAQFPGYMASTASAKAKFRSMSTPKERSAAGYDAYSEHCFPF
ADRLLSPIPSMSPIPSVASDMGFARPPVAQRSPRVPAKSPMTPARARTRRSHGGHHSFGSEAALHQLQMEHYTPVR

Nucleotide Sequence
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CGGGCGCGTCTCGCGAGTCTTGCCT...

CGGGCGCGTCTCGCGAGTCTTGCCTCGTCTCTCTGCAAATGGGTGCCGTCCATATATAAACTGGACGCGGCAGTGGTCCTCAGTCTTCACACTCCCCACTCCTCTCTCTCTTTCTCCCTCCCTCGTCGTCCCATCGGAACTCGGATGGGGAGCGGGAGCGAGGCGCATCTGCCGCGGAGCCGTTCGGTCTCCGCGCAGCCTTGAGCGCCGCACCGTGTCTTCGGGCTGTCCAGCTTGCGTCGCGAGGGGCGAGACGCTACGCGAGAGCGCGACAGGGCTCTTGGATCCCCCCAGAGGGCCACAGAGCCCACACAACAGCAGATACCCGCCGCGCAGTGGAGCCTAGATAGAGAGAGAGAGAGAGAGTAGTGCAGCCGCTACCGCTCTCGCTCGCTCGGCCGTCGGCGACATGGACAAGGAGAAGAGGAGGAGGAGCTGGATCGAGCGCATCAGGCGGCTCTTCACCACCTCGTCGTCCGACCCCAAGCCCGCGCCCAAACCAGCACCAGACAAGAAGGCCAAGAGCAAGCGGTGGCTGCCGGGGAAGCTGCGCGCGCAGCAGTCGTTCGCGCTCCCGGCGCCCGCGCCCGCGGCCACGGAACCGGACCAGATCAGGCGGGCGGAGGACGAGCAGAGCAAGCACGCCGTGGCCGTCGCCCTCGCCACCGCGGCCGCCGCCGAGGCCGCTGTCGCCGCCGCGCACGCCGCCGCCCACGTGGTCCGCCTCACCGGCCAGGCGCCGGTGGTGCCGCCCTTGCCCCGGCAGGTGCGGGGGCAGGAGAAGGAGCGGGAGCAGGCCGCCGTCGCCATCCAGTCGGCTTACCGCGGATACCTGGCTCGGCGGGCGCTGCGCGCGCTCAAGGGCCTGGTGCGGCTGCAGGCGCTGATCCGGGGGCAGGCGGTGCGGCGGCAGACGGCGGCCACGCTGCGCGGCCTCGAATCCCTCATGCGGATCCAGGCCCGCCACCGGTCCAGGGCCGGCGGCGTCGACCACCACCAGCAGCAGGCGGCGGACGACGACGACGCCCTGCTGCTGCGGCGCGGCAGGGAGCTCTTTGCCGCTGCCGCCGCCGTCCACGAGCAGCAGCAGGCGAGCAACAAGCGGTGGGACAGCAGCATCTTCTCCAAGGAAGAGATGAGCGCCATGACGAGGAGCAAGGAGGAGGCGGCCCTCAAGCGCGTGCGCGCGCTGCAGTACGCCTCCCTGCACAACGAGAAGCTGGGCCTCCGGCGGCCGCCCTCCCCCTCCATGTCCAGGGACGACGAGGCGGACGCGCTGAACAACCAGCGCTGGAGCTGGCTGGAGGAGTGGGTCGGCTCGCAGCCCTTCGACAAGGACGTCCCCGTGGCGCACCAGTCCCCGTACACCCGCAGCGCCAGCAGGGGTGAGCACGACGACGTCGTCGACCGGCTCGGCTGCTCGGCCCGCCGCTCCTTCGCCCGGCCGACGCGCACGCCGCCGAGGGGGGACTGCTACGGCGACGCGGCGCAGTTCCCGGGGTACATGGCCTCCACCGCGTCCGCCAAGGCCAAGTTCAGGTCCATGAGCACGCCCAAGGAGCGCTCCGCCGCCGGCTACGACGCCTACTCGGAGCACTGCTTCCCGTTCGCCGACCGCCTGCTCTCGCCGATCCCGTCCATGTCGCCCATCCCCTCCGTCGCCAGCGACATGGGCTTCGCCAGGCCGCCCGTCGCGCAGCGGTCGCCGCGGGTGCCGGCCAAGAGCCCCATGACGCCCGCGAGGGCGCGCACGCGGAGGTCGCACGGCGGCCACCACAGCTTCGGCTCCGAGGCTGCGCTGCACCAGCTGCAGATGGAGCACTACACCCCAGTCCGCTGAACGTTTGCTCTTTTTCTGATGATGCGATGCAACGAGCAACGATGCCGTCCGTCGGTCCTTTGTGAAGATACAATTCTTTTGTTTGTTCGACTTCCTTACCATAAATTGGTGGGTTCAAATGTTGGATGCAAGACGATGGAACTTTCAATCGCACTGTAGGTGACAATGCACCGTGGATCCATGATGTAAGAGCGCAAACTATATGAATTGTGATCTGGGCCTAGTCAGTCCTGAACAGAGGCACGGTCCCCTTTCCCACTGTCTAGGGAATAAGAGTCGCCAACAGGAGTATGTAAACTCCTTGATTGCACGCTTCCTGAGTCGCCAACAGGGAATAAGCACAATAATTATCTTC

Zm00001d029197_T001 from maize genome v4

Amino Acid Sequence
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MDKEKRRRSWIERIRRLFTTSSSDPKPAPKPAPDKKAKSKRWLPGKLRAQQSFALPAPAPAATEPDQIRRAEDEQSKHAV
AVALATAAAAEAAVAAAHAAAHVVRLTGQAPVVPPLPRQVRGQEKEREQAAVAIQSAYRGYLARRALRALKGLVRLQALI
RGQAVRRQTAATLRGLESLMRIQARHRSRAGGVDHHQQQAADDDDALLLRRGRELFAAAAAVHEQQQASNKRWDSSIFSK
EEMSAMTRSKEEAALKRVRALQYASLHNEKLGLRRPPSPSMSRDDEADALNNQRWSWLEEWVGSQPFDKDVPVAHQSPYT
RSASRGEHDDVVDRLGCSARRSFARPTRTPPRGDCYGDAAQFPGYMASTASAKAKFRSMSTPKERSAAGYDAYSEHCFPF
ADRLLSPIPSMSPIPSVASDMGFARPPVAQRSPRVPAKSPMTPARARTRRSHGGHHSFGSEAALHQLQMEHYTPVR

Nucleotide Sequence
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GAGAGAGAGAGAGAGTAGTGCAGCC...

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Protein ZmOrphan49

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmOrphan49 is the regulator

Interactions where ZmOrphan49 is the target
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Zm00001eb017140_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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GRMZM2G102497_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Zm00001d029197_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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